Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016050: Rickettsia japonica YH, complete genome

NCBI: NC_016050

Host Lineage: Rickettsia japonica; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: The causal agent of Oriental Spotted Fever. Human pathogen. Rickettsiae are obligate intracellular Gram-negative bacteria mostly found in arthropods, some of which cause mild to severe diseases in humans. Rickettsia japonica strain YH was isolated in 1985 from the blood of a patient with febrile exanthematous illness in Japan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1152243358318360Island text2.5742912.65526.5806Neighbours21BLASTN+15224.gbk
273993*9772123729Island text2.1423111.490820.0877Neighbours21BLASTN+73993.gbk
3182218*20254820331Island text1.5984516.279227.3042Neighbours21BLASTN182218.gbk
423600025587419875Island text1.7322812.917524.2709Neighbours21BLASTN236000.gbk
5771752*79719725446Island text1.8702511.384425.2284Neighbours21BLASTN771752.gbk
6938000*95659918600Island text2.3084812.679426.3512Neighbours21BLASTN938000.gbk
71088223*111009921877Island text1.6799711.861623.7544Neighbours21BLASTN+1088223.gbk
81149000*117209923100Island text1.5636916.164627.3628Neighbours21BLASTN1149000.gbk