Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016048: Oscillibacter valericigenes Sjm18-20, complete genome

NCBI: NC_016048

Host Lineage: Oscillibacter valericigenes; Oscillibacter; Oscillospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a mesophilic, strictly anaerobic, valerate-producing bacterium isolated from the alimentary canal of a Japanese corbicula clam collected on a seacoast in Shimane Prefecture in Japan. Gram-stain negative, non-sporulating, mesophilic, neutrophilic, strictly anaerobic bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1184500*23109946600Island text2.3262141.962220.1577Neighbours41BLASTN+IslandViewer 184500.gbk
230834234850840167Island text2.189139.31228.6204Neighbours23BLASTN+IslandViewer 308342.gbk
335120536909917895Island text1.900736.089522.518Neighbours23BLASTN+IslandViewer 351205.gbk
437567640305027375Island text1.8239236.856621.833Neighbours23BLASTN+IslandViewer 375676.gbk
545673247509918368Island text1.8298836.460431.7639Neighbours31BLASTN+IslandViewer 456732.gbk
652263754274220106Island text2.0843940.065725.2394Neighbours31BLASTN+IslandViewer 522637.gbk
769341671458621171Island text1.7000737.263818.0818Neighbours41BLASTN+IslandViewer 693416.gbk
8751000*78529334294Island text2.2949938.271522.6014Neighbours23BLASTN+IslandViewer 751000.gbk
9797762*84570847947Island text2.0470339.103417.584Neighbours23BLASTN+IslandViewer 797762.gbk
10987699*101042322725Island text1.6903534.782318.3214Neighbours31BLASTN+IslandViewer 987699.gbk
111390463141812727665Island text2.3385643.345324.0891Neighbours31BLASTN+1390463.gbk
121438721147959940879Island text1.8432737.148519.4167Neighbours41BLASTN+IslandViewer 1438721.gbk
131580352159959919248Island text1.6061636.96318.3792Neighbours23BLASTN+IslandViewer 1580352.gbk
141602500162441521916Island text1.9985838.816518.5542Neighbours23BLASTN+IslandViewer 1602500.gbk
151625812164417918368Island text1.9755536.554618.1691Neighbours41BLASTN+IslandViewer 1625812.gbk
161694631171326818638Island text1.8570936.822116.1591Neighbours31BLASTN+IslandViewer 1694631.gbk
171930089*196890738819Island text2.0861739.992129.4042Neighbours31BLASTN+IslandViewer 1930089.gbk
182055199*207762422426Island text2.3347540.539322.4571Neighbours31BLASTNIslandViewer 2055199.gbk
192167440218553118092Island text1.4839337.694627.6221Neighbours23BLASTN+IslandViewer 2167440.gbk
202243108226609922992Island text1.8194835.572748.5626Neighbours31BLASTN2243108.gbk
212343500*236132917830Island text2.1190636.797828.4322Neighbours31BLASTN+IslandViewer 2343500.gbk
222563222258912125900Island text2.5151744.037219.6625Neighbours31BLASTN+2563222.gbk
232678205*271916340959Island text1.7708439.599128.4818Neighbours11BLASTN+IslandViewer 2678205.gbk
242734563*276068026118Island text1.8737839.107325.8211Neighbours31BLASTN+IslandViewer 2734563.gbk
252873669290769834030Island text2.3156241.547222.1435Neighbours11BLASTN+IslandViewer 2873669.gbk
262907702*3016847109146Island text2.1091939.69823.3692Neighbours23BLASTN+IslandViewer 2907702.gbk
273063888*310642742540Island text2.3561743.06224.3733Neighbours31BLASTN+IslandViewer 3063888.gbk
283261166328228521120Island text1.8415537.449128.6282Neighbours31BLASTN+3261166.gbk
293611146362999018845Island text1.5207435.676123.6326Neighbours31BLASTN+IslandViewer 3611146.gbk
303667890370386435975Island text1.942138.661527.8886Neighbours41BLASTN+IslandViewer 3667890.gbk
313856665387844121777Island text1.7308735.82527.3054Neighbours31BLASTN+IslandViewer 3856665.gbk
323899878392277322896Island text1.7767337.895222.8712Neighbours31BLASTN+3899878.gbk
333947663397682129159Island text2.3483344.634430.4737Neighbours31BLASTN+IslandViewer 3947663.gbk
343983500*400235618857Island text1.7786336.282523.2347Neighbours31BLASTN+IslandViewer 3983500.gbk
354047922*409182743906Island text3.0949843.351225.529Neighbours31BLASTN+IslandViewer 4047922.gbk
364163225421109947875Island text1.8834939.445226.5194Neighbours23BLASTN+IslandViewer 4163225.gbk