Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016043: Taylorella asinigenitalis MCE3 chromosome, complete genome

NCBI: NC_016043

Host Lineage: Taylorella asinigenitalis; Taylorella; Alcaligenaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Host: donkey; Isolation source: genital tract of 6 year-old jack from a stud farm in the Loir-et-Cher, France.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
142847645128922814Island text1.5785324.806234.0174+IslandViewer 428476.gbk
247171949461522897Island text1.8452927.589739.4252Neighbours21BLASTN471719.gbk
31043366106783824473Island text1.7627728.317236.7288Neighbours21BLASTN1043366.gbk
41563505158409920595Island text1.7144525.697244.2454Neighbours21BLASTN1563505.gbk
51603499*162683423336Island text2.3285127.754145.0595Neighbours21BLASTN1603499.gbk