Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016027: Gluconacetobacter xylinus NBRC 3288, complete genome

NCBI: NC_016027

Host Lineage: Komagataeibacter medellinensis; Komagataeibacter; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Isolated from vinegar in Japan. Acetic acid bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
154305*8531631012Island text2.3205536.915931.565Neighbours11BLASTN+IslandViewer 54305.gbk
212385315601332161Island text2.244836.202525.9699Neighbours11BLASTN+IslandViewer 123853.gbk
319484222435629515Island text2.2183135.408825.2679Neighbours11BLASTN+IslandViewer 194842.gbk
422918026174732568Island text1.7065134.147434.3547Neighbours54BLASTN+IslandViewer 229180.gbk
534676836509918332Island text1.5334827.191832.5862Neighbours54BLASTN+346768.gbk
637666939874922081Island text1.6014531.021627.0261Neighbours54BLASTN+376669.gbk
71357659140149643838Island text1.8222833.601525.8799Neighbours11BLASTN+IslandViewer 1357659.gbk
81401500*141909917600Island text1.4701431.639119.8806Neighbours11BLASTN+IslandViewer 1401500.gbk
91647110169572448615Island text2.3198638.065127.9297Neighbours11BLASTN+IslandViewer 1647110.gbk
101776300179534419045Island text1.514529.748325.198Neighbours11BLASTN+IslandViewer 1776300.gbk
111851737*188759935863Island text1.81932.108524.733NeighboursBLASTN+IslandViewer 1851737.gbk
121902854193735834505Island text2.4698941.855932.6499Neighbours11BLASTN+IslandViewer 1902854.gbk
132047954*211021762264Island text2.662141.303624.8142Neighbours11BLASTN+IslandViewer 2047954.gbk
142387832*241009922268Island text1.4540128.830326.5928Neighbours11BLASTN+IslandViewer 2387832.gbk
152446806*246527718472Island text2.1272729.251839.4932Neighbours11BLASTNIslandViewer 2446806.gbk
162512297254476032464Island text1.8686334.855826.0132Neighbours11BLASTN+IslandViewer 2512297.gbk
172580477259977719301Island text1.5925329.216133.2879Neighbours11BLASTN+IslandViewer 2580477.gbk
183038943*307052031578Island text2.318934.159438.4755Neighbours54BLASTN+3038943.gbk