Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016026: Micavibrio aeruginosavorus ARL-13 chromosome, complete genome

NCBI: NC_016026

Host Lineage: Micavibrio aeruginosavorus; Micavibrio; ; ; Proteobacteria; Bacteria

General Information: This is a gram-negative exoparasitic predatory bacterium. Micavibrio aeruginosavorus strain ARL-13 was shown to prey on Pseudomonas aeruginosa. Originally isolated from sewage water.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
129695132039423444Island text1.7313633.727141.4361Neighbours58BLASTN+IslandViewer 296951.gbk
2468311*49298524675Island text1.720534.630346.1239Neighbours41BLASTN468311.gbk
3997225*103720039976Island text2.4073942.610839.9522Neighbours41BLASTNIslandViewer 997225.gbk
41224129*125391729789Island text2.4224747.940724.1153Neighbours31BLASTN+IslandViewer 1224129.gbk
51760856*178259921744Island text1.6412141.493136.2854Neighbours58BLASTN+IslandViewer 1760856.gbk
61969766200354933784Island text2.6553145.690130.8483Neighbours58BLASTN+IslandViewer 1969766.gbk
72082500*211358331084Island text2.0732346.019939.9842Neighbours58BLASTN+IslandViewer 2082500.gbk
82170500219248521986Island text1.6019941.207828.99Neighbours11BLASTN+IslandViewer 2170500.gbk