Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016025: Candidatus Chloracidobacterium thermophilum B chromosome chromosome

NCBI: NC_016025

Host Lineage: Chloracidobacterium thermophilum; Chloracidobacterium; Acidobacteriaceae; ; Acidobacteria; Bacteria

General Information: This organism produces bacteriochlorophyll a and c under oxic conditions and represents a new group of photosynthetic bacteria. The only known chlorophototroph in the phylum Acidobacteria. Aerobic photoheterotroph that lacks the ability to synthesize several essential nutrients. Naturally inhabits microbial mats of alkaline siliceous hot springs in Yellowstone National Park.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1659239264826726Island text2.0660531.028124.7545Neighbours11BLASTN+65923.gbk
2552000*57563023631Island text1.9381637.226427.4089Neighbours11BLASTN+IslandViewer 552000.gbk
359667062579729128Island text2.1722532.141227.9837Neighbours11BLASTN+IslandViewer 596670.gbk
4807226*82979722572Island text1.7612834.919132.2725Neighbours11BLASTN807226.gbk