Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016024: Candidatus Chloracidobacterium thermophilum B chromosome chromosome

NCBI: NC_016024

Host Lineage: Chloracidobacterium thermophilum; Chloracidobacterium; Acidobacteriaceae; ; Acidobacteria; Bacteria

General Information: This organism produces bacteriochlorophyll a and c under oxic conditions and represents a new group of photosynthetic bacteria. The only known chlorophototroph in the phylum Acidobacteria. Aerobic photoheterotroph that lacks the ability to synthesize several essential nutrients. Naturally inhabits microbial mats of alkaline siliceous hot springs in Yellowstone National Park.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1156000*17748221483Island text2.2560329.520745.0647Neighbours11BLASTN+156000.gbk
2275845*29878822944Island text1.5723528.750228.8971Neighbours11BLASTN+275845.gbk
31099602112307923478Island text1.4274926.453136.3077Neighbours11BLASTN+1099602.gbk
41185388*120989624509Island text1.3636226.90326.9399Neighbours11BLASTN1185388.gbk
51472421149225919839Island text1.5231931.560129.3458Neighbours11BLASTN1472421.gbk
61764516*180484640331Island text1.7519724.270441.3327Neighbours326BLASTN+1764516.gbk
71876000189861122612Island text5.8068760.738534.2821Neighbours11BLASTN1876000.gbk
81974715*200182027106Island text1.7289322.543845.4623Neighbours110BLASTN+1974715.gbk