Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016023: Bacillus coagulans 36D1 chromosome, complete genome

NCBI: NC_016023

Host Lineage: Bacillus coagulans; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus coagulans, a lactic acid producing bacterium, was first identified as a spoilage agent of milk products. This organism can be used in the production of ethanol and lactic acid from cellulose and hemicellulose acid hydrolysate. Bacillus coagulans also produces other commercially important chemicals like cyclodextrins and amylases, and has been used as a probiotic in animal feed.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
126758129361426034Island text2.1174331.365518.2852Neighbours21BLASTN+267581.gbk
2579000*60677027771Island text2.4161831.765915.7034Neighbours23BLASTN+IslandViewer 579000.gbk
372984374912819286Island text1.5726727.506922.7921Neighbours21BLASTN+729843.gbk
475523777656521329Island text1.638328.188425.3614Neighbours24BLASTN+IslandViewer 755237.gbk
587541689225416839Island text1.5435728.067817.5327Neighbours23BLASTN+IslandViewer 875416.gbk
691517894468129504Island text1.6315327.167416.1043Neighbours21BLASTN+IslandViewer 915178.gbk
71083826110643922614Island text1.5068536.569821.7322Neighbours31BLASTN+1083826.gbk
81143130*116707723948Island text1.5351728.187246.8578Neighbours21BLASTN+IslandViewer 1143130.gbk
91419217*144350924293Island text1.8054430.207620.1014Neighbours24BLASTN+IslandViewer 1419217.gbk
101501553152459923047Island text2.2784531.052712.7458Neighbours23BLASTN+IslandViewer 1501553.gbk
111538000*156098122982Island text1.546827.644715.1358Neighbours31BLASTN+IslandViewer 1538000.gbk
121658377168209923723Island text1.6467828.100121.3564Neighbours24BLASTN+IslandViewer 1658377.gbk
131725294*174587720584Island text1.4442332.429546.6013Neighbours31BLASTN+1725294.gbk
141769925*180897239048Island text2.2011831.887414.709Neighbours21BLASTN+IslandViewer 1769925.gbk
151839503186209922597Island text1.5427127.766332.8542Neighbours31BLASTN+1839503.gbk
161874827190516230336Island text2.2067231.866521.7683Neighbours21BLASTN+IslandViewer 1874827.gbk
171923170195817135002Island text2.2059532.767920.6054NeighboursBLASTN+IslandViewer 1923170.gbk
181959255198529526041Island text1.7243831.472128.224Neighbours21BLASTN+IslandViewer 1959255.gbk
192163000*219738434385Island text2.6736234.500122.4218Neighbours21BLASTN+IslandViewer 2163000.gbk
202265000229120626207Island text2.2937233.394922.9883Neighbours21BLASTN+IslandViewer 2265000.gbk
213391116341434623231Island text1.4853128.526318.0716Neighbours24BLASTN+3391116.gbk