Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016012: Candidatus Arthromitus sp. SFB-rat-Yit, complete genome

NCBI: NC_016012

Host Lineage: Arthromitus; Arthromitus; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Candidatus Arthromitus sp. isolated from rat. Segmented filamentous bacteria isolated from rat.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116134*7078354650Island text4.7365921.675235.215Neighbours21BLASTN+IslandViewer 16134.gbk
2104500*12519420695Island text3.2571419.206735.5481Neighbours21BLASTN104500.gbk
313550015942923930Island text2.4222820.334634.5292Neighbours21BLASTN+135500.gbk
4236012*27777541764Island text5.2115426.172843.6056Neighbours21BLASTN236012.gbk
5396910*41471617807Island text2.8179617.765134.3708Neighbours21BLASTN+396910.gbk
656168758109919413Island text2.4888918.531130.8198Neighbours21BLASTN561687.gbk
766517168380618636Island text1.8958318.97933.6064Neighbours21BLASTN665171.gbk
8805680*82784122162Island text2.4991418.941533.7788Neighbours21BLASTN805680.gbk
9879972*90262722656Island text3.1475218.588937.4589Neighbours21BLASTN+879972.gbk
10977357100071423358Island text2.2093318.157233.1344Neighbours21BLASTN+977357.gbk
111010405*104317432770Island text2.278621.615731.2228Neighbours21BLASTN1010405.gbk
121312352*133509922748Island text2.2537620.72931.667Neighbours21BLASTN+1312352.gbk
131380260*140143821179Island text4.596919.494837.8463Neighbours21BLASTN1380260.gbk