Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016011: Listeria ivanovii subsp. ivanovii PAM 55, complete genome

NCBI: NC_016011

Host Lineage: Listeria ivanovii; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria

General Information: Listeria ivanovii is an animal pathogen that causes abortions and stillbirths in ruminants, primarily sheep. This organism produces a number of virulence factors including hemolysin, sphingomylelinase, and phospholipase. Like other Listeria species, Listeria ivanovii is found in soil, water, and sewage.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
159070*8009921030Island text1.6997819.66840.2028NeighboursBLASTN59070.gbk
238200040188119882Island text1.6199523.065441.4143NeighboursBLASTN382000.gbk
347090848926618359Island text1.5030520.464532.1416Neighbours+470908.gbk
467841969889020472Island text1.687219.854938.0197Neighbours21BLASTN678419.gbk
51419394144212522732Island text1.7172920.932642.3255Neighbours21BLASTN+1419394.gbk
61910638192986219225Island text1.5914420.27237.6568Neighbours21BLASTN1910638.gbk
72875747290001324267Island text1.8929416.719437.465Neighbours21BLASTN+2875747.gbk