Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016010: Xanthomonas axonopodis pv. citrumelo F1 chromosome, complete

NCBI: NC_016010

Host Lineage: Xanthomonas alfalfae; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: The organism causes the disease Citrus Bacterial Spot. Isolated from Avon Park, Florida, in 1984. Plant pathogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1659499248826540Island text1.6811418.689223.6996Neighbours11BLASTN+IslandViewer 65949.gbk
213765816527327616Island text2.2758124.064431.9921Neighbours11BLASTN+IslandViewer 137658.gbk
363753566446226928Island text2.5216428.163824.1777Neighbours11BLASTN+IslandViewer 637535.gbk
41169850*119450124652Island text1.7646322.574221.5914Neighbours11BLASTN+IslandViewer 1169850.gbk
51247008*127542528418Island text1.7871822.655424.0803Neighbours11BLASTNIslandViewer 1247008.gbk
61822212*190411881907Island text2.4006929.2326.1694Neighbours11BLASTN+IslandViewer 1822212.gbk
72059791209065330863Island text1.4476617.953622.6337Neighbours11BLASTN+2059791.gbk