Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016002: Pseudogulbenkiania sp. NH8B, complete genome

NCBI: NC_016002

Host Lineage: Pseudogulbenkiania; Pseudogulbenkiania; Chromobacteriaceae; Neisseriales; Proteobacteria; Bacteria

General Information: Originally isolated from an agricultural field in Niigata, Japan, where paddy rice and soybean were rotationally cultivated every 2 years. Denitrification.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111459914599Island text3.0751434.262236.9391Neighbours11BLASTN1.gbk
2379692*40188922198Island text1.5044225.519441.0346Neighbours11BLASTN379692.gbk
31048420108220633787Island text3.5525236.298826.9332Neighbours11BLASTN+IslandViewer 1048420.gbk
41326500*135490028401Island text2.2705731.690135.2609Neighbours11BLASTN1326500.gbk
51741109176553524427Island text2.2538729.427923.4939Neighbours11BLASTN+IslandViewer 1741109.gbk
61765959178809922141Island text3.1633431.41826.1701Neighbours11BLASTN+IslandViewer 1765959.gbk
71938749*196259923851Island text1.909126.109127.2389Neighbours11BLASTN+1938749.gbk
81975000*202494749948Island text4.2723740.68530.7582Neighbours11BLASTN+IslandViewer 1975000.gbk
92037374208061443241Island text2.5232830.96135.7043Neighbours11BLASTN+IslandViewer 2037374.gbk
102179969220388623918Island text2.3341730.208322.8888Neighbours11BLASTN+IslandViewer 2179969.gbk
112453919250029546377Island text2.2597728.130333.7704Neighbours11BLASTN+IslandViewer 2453919.gbk
122534516255550820993Island text2.2298227.381527.8241Neighbours11BLASTN+2534516.gbk
132591189261459923411Island text1.73223.840921.6845Neighbours11BLASTN+IslandViewer 2591189.gbk
142652500267117018671Island text1.5475926.254523.7869Neighbours11BLASTN+2652500.gbk
152825017*284854323527Island text1.6688523.881320.7821Neighbours11BLASTN+2825017.gbk
162946702*299376147060Island text2.4989628.397128.0403Neighbours11BLASTN+IslandViewer 2946702.gbk
173077648*310047122824Island text1.5169623.893523.5108Neighbours11BLASTN3077648.gbk
183704006*373059326588Island text2.2827724.078946.8997Neighbours11BLASTN+3704006.gbk
193813039383732624288Island text1.8535530.164144.5918Neighbours11BLASTN+IslandViewer 3813039.gbk