Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016001: Flavobacterium branchiophilum, complete genome

NCBI: NC_016001

Host Lineage: Flavobacterium branchiophilum; Flavobacterium; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Flavobacterium branchiophilum strain FL-15 has been isolated from a diseased sheatfish (Silurus glanis) in Hungary Members of the genus Flavobacterium occur in a variety of ecological niches and represent an interesting diversity of life styles. Flavobacterium branchiophilum is the main causative agent of bacterial gill disease, a severe condition affecting various cultured freshwater fish species worldwide, in particular salmonids in Canada and Japan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1224213*24872824516Island text1.3934815.734426.0629Neighbours21BLASTN+224213.gbk
2364666*38832423659Island text1.4817317.084131.8431Neighbours21BLASTN364666.gbk
386566688901523350Island text1.6007220.592237.5287Neighbours21BLASTN+865666.gbk
4905164*92809922936Island text1.4870818.099528.152Neighbours21BLASTN905164.gbk
5976556*99707120516Island text1.4788516.330328.3896Neighbours21BLASTN976556.gbk
61015164103362418461Island text1.5355315.562231.5325Neighbours21BLASTN+1015164.gbk
71893685*191619822514Island text1.640215.983728.5723Neighbours21BLASTN1893685.gbk
82421580244423022651Island text1.4759121.206237.7573Neighbours21BLASTN2421580.gbk
92980245*300490924665Island text1.8013818.590726.6215Neighbours21BLASTN2980245.gbk
103267772329003722266Island text1.9658216.711335.1322Neighbours21BLASTNIslandViewer 3267772.gbk
113293000334954656547Island text1.7109717.904934.8011Neighbours21BLASTN+IslandViewer 3293000.gbk