Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015978: Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete

NCBI: NC_015978

Host Lineage: Lactobacillus sanfranciscensis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This is the characteristic organism in wheat sourdough. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1328755736624492Island text2.8838221.30833.6138Neighbours21BLASTN+32875.gbk
211365613662622971Island text2.1171519.938628.5991Neighbours21BLASTN+113656.gbk
3352478*38431931842Island text2.9546224.202238.4386Neighbours21BLASTN+352478.gbk
4412856*44063427779Island text2.7911923.293338.9677Neighbours21BLASTN+412856.gbk
5996933*102184824916Island text3.2778827.329442.2032Neighbours21BLASTN+996933.gbk
61266196*129576529570Island text2.0953620.860333.3683Neighbours21BLASTN+1266196.gbk