Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015977: Roseburia hominis A2-183 chromosome, complete genome

NCBI: NC_015977

Host Lineage: Roseburia hominis; Roseburia; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Roseburia hominis is one of the most numerous Firmicutes in the human gut.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118910121539626296Island text3.3711940.921933.5915Neighbours37BLASTNIslandViewer 189101.gbk
2255029*27936924341Island text2.0856736.670134.8946Neighbours37BLASTN255029.gbk
344249347780535313Island text3.7212141.779529.969Neighbours21BLASTN+IslandViewer 442493.gbk
457725560009922845Island text1.934734.426736.3382Neighbours37BLASTN+577255.gbk
5935798*97190436107Island text4.2825744.220731.6183Neighbours37BLASTN935798.gbk
62189115*221439425280Island text3.715241.089135.0491Neighbours37BLASTN+2189115.gbk
72280834230409923266Island text2.0833435.803727.1044Neighbours37BLASTN+IslandViewer 2280834.gbk
82309873*234468334811Island text3.1089141.26434.1082Neighbours21BLASTN+IslandViewer 2309873.gbk
92445835*246914223308Island text2.1744938.053331.6726Neighbours37BLASTNIslandViewer 2445835.gbk
102565922258861222691Island text2.5220235.709528.5297Neighbours37BLASTNIslandViewer 2565922.gbk
112631789266835236564Island text2.2389637.172242.1158Neighbours21+IslandViewer 2631789.gbk
122718437*274615427718Island text3.3622542.26636.9887Neighbours21BLASTN+2718437.gbk
132807782*284716939388Island text4.5764444.704232.6131Neighbours37BLASTNIslandViewer 2807782.gbk
142874000*290649632497Island text3.2723742.503729.3055Neighbours21BLASTN+IslandViewer 2874000.gbk
152920500293846917970Island text1.7431937.709810.7139Neighbours21BLASTN+IslandViewer 2920500.gbk
162966971299209925129Island text2.8469639.811828.4862Neighbours21BLASTN+IslandViewer 2966971.gbk
173011177304196430788Island text4.6497144.082933.9587Neighbours37BLASTN+IslandViewer 3011177.gbk
183127500*314861521116Island text1.8881139.879651.4377Neighbours37BLASTN+3127500.gbk
193215770*327589560126Island text3.6019741.9430.5167Neighbours21BLASTN+IslandViewer 3215770.gbk
203324000*334644022441Island text1.9958237.229538.8111Neighbours37BLASTN+IslandViewer 3324000.gbk
213424178*3530311106134Island text3.7356242.384634.8984Neighbours21BLASTN+IslandViewer 3424178.gbk