Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015976: Sphingobium sp. SYK-6, complete genome

NCBI: NC_015976

Host Lineage: Sphingobium; Sphingobium; Sphingomonadaceae; Sphingomonadales; Proteobacteria; Bacteria

General Information: Lignin degrading bacterium isolated from the waste liquor of a kraft pulp mill.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
181492283729022369Island text1.5675221.810119.5971Neighbours11BLASTN814922.gbk
21064888109285227965Island text1.980920.06218.591Neighbours11BLASTN+IslandViewer 1064888.gbk
31893076*193522042145Island text1.4802918.797914.7008Neighbours11BLASTN+IslandViewer 1893076.gbk
42023540205359930060Island text1.733422.925421.4781Neighbours11BLASTN+IslandViewer 2023540.gbk
52064387209137026984Island text1.6114122.02422.2043Neighbours11BLASTN+2064387.gbk
62150676*217980029125Island text2.0024324.972820.2278Neighbours11BLASTNIslandViewer 2150676.gbk
72187377*221432926953Island text2.8938527.610725.9134Neighbours11BLASTN2187377.gbk
82406036242731421279Island text1.5083121.057315.212Neighbours11BLASTN+IslandViewer 2406036.gbk
92900891*292514524255Island text2.1519525.364421.2911Neighbours11BLASTN+IslandViewer 2900891.gbk
103118804314699128188Island text1.8716221.268723.221Neighbours11BLASTN+IslandViewer 3118804.gbk
113924962*394896824007Island text2.5852725.628130.5289Neighbours11BLASTN3924962.gbk