Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015975: Lactobacillus ruminis ATCC 27782 chromosome, complete genome

NCBI: NC_015975

Host Lineage: Lactobacillus ruminis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This organism was isolated from bovine rumen. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19950011791118412Island text1.6747225.851226.7572Neighbours21BLASTNIslandViewer 99500.gbk
2267994*28810120108Island text1.8746236.162553.0678Neighbours324BLASTN267994.gbk
3380500*40582525326Island text1.8424329.868834.3773Neighbours21BLASTN+IslandViewer 380500.gbk
4441580*46671625137Island text1.7372832.221248.5986Neighbours31BLASTN+441580.gbk
5558523*58623227710Island text2.0524828.151427.3639Neighbours21BLASTN+IslandViewer 558523.gbk
6752927*77561922693Island text1.5758830.47840.1218Neighbours21BLASTN+IslandViewer 752927.gbk
778931281162622315Island text1.609527.874926.9504Neighbours21BLASTN+IslandViewer 789312.gbk
892381294625822447Island text1.5116727.012429.0474Neighbours21BLASTN+923812.gbk
91056731*108723230502Island text3.0762934.563522.7927Neighbours21BLASTN+IslandViewer 1056731.gbk
101493636*151659922964Island text1.9156843.554553.5709NeighboursBLASTN1493636.gbk
111593797161660922813Island text1.4909126.945515.8911Neighbours21BLASTN+IslandViewer 1593797.gbk
121936504*196101924516Island text1.6243133.116546.2334Neighbours31BLASTN+1936504.gbk