Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015966: Rhodothermus marinus SG0.5JP17-172 chromosome, complete genome

NCBI: NC_015966

Host Lineage: Rhodothermus marinus; Rhodothermus; Rhodothermaceae; Bacteroidetes Order II; Bacteroidetes; Bacteria

General Information: Environment: Hot spring, Marine; Temp: Thermophile. This organism is a thermophilic bacterium which can grow at temperatures of up to 77 degrees C and at salt concentrations of over 6% NaCl. It has been isolated from shallow water geothermal habitats in Iceland, Portugal and Italy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1521703*55299931297Island text4.1232838.301243.666Neighbours11BLASTNIslandViewer 521703.gbk
21040562*106132620765Island text1.6547620.616530.7772Neighbours11BLASTN+1040562.gbk
31145974*117295626983Island text1.873725.841937.7124Neighbours11BLASTN+1145974.gbk
41316901134259925699Island text1.5077222.604633.1648Neighbours11BLASTNIslandViewer 1316901.gbk
51661329168678525457Island text1.8611526.528227.1366Neighbours11BLASTNIslandViewer 1661329.gbk
62256943228043123489Island text3.3597636.752349.6623Neighbours11BLASTNIslandViewer 2256943.gbk
72337833*238066842836Island text1.887424.729331.0803Neighbours11BLASTN+IslandViewer 2337833.gbk
82841420*286298221563Island text1.5771720.375332.8339Neighbours11BLASTN+2841420.gbk
92875140*289487519736Island text1.4937522.428327.281Neighbours11BLASTN2875140.gbk