Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015958: Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome

NCBI: NC_015958

Host Lineage: Thermoanaerobacter wiegelii; Thermoanaerobacter; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: New Zealand; Environment: Fresh water, Hot spring; Temp: Thermophile. Thermoanaerobacter wiegelii was first isolated from a freswater hot spring in New Zealand. This organism is an obligate anaerobe and can growth at temperatures as high as 78 degrees C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1115113009918589Island text2.3898222.075641.7651Neighbours21BLASTN11511.gbk
2579577696119005Island text2.8107228.155451.1466Neighbours21BLASTN+57957.gbk
384270*10276618497Island text1.808321.637938.1289NeighboursBLASTN+84270.gbk
4141500*15959918100Island text1.8003321.980444.3507NeighboursBLASTN141500.gbk
5677500*69545217953Island text4.1613221.826445.4014Neighbours21BLASTN+677500.gbk
681544283814622705Island text2.5240420.026834.7363Neighbours21BLASTN+IslandViewer 815442.gbk
71422319*144310120783Island text2.0178522.434341.753Neighbours21BLASTN1422319.gbk
81465631*149575430124Island text2.9257435.593147.9688Neighbours21BLASTN+1465631.gbk
91516944*154043823495Island text1.8885920.777640.4495Neighbours21BLASTN+1516944.gbk
101983815200459920785Island text1.7176424.202724.2034Neighbours21BLASTN+1983815.gbk
112174731219712922399Island text2.1039525.647835.6694Neighbours21BLASTN+2174731.gbk
122206032*223846032429Island text1.8666222.189835.4149Neighbours21BLASTN+2206032.gbk
132251619*232072969111Island text2.7203723.208343.1979Neighbours21BLASTN+2251619.gbk
142361551*238227520725Island text2.1541221.7239.4506Neighbours21BLASTN+2361551.gbk
152527376255013922764Island text1.8547521.603641.686Neighbours21BLASTN+2527376.gbk