Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015955: Halophilic archaeon DL31 plasmid phalar01, complete sequence

NCBI: NC_015955

Host Lineage: halophilic archaeon DL31; unclassified Archaea; ; ; unclassified Archaea; Archaea

General Information: Novel haloarchaea from Deep Lake: an extremely cold and hypersaline Antarctic lake.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115343253432Island text2.3788840.818332.5074Neighbours12BLASTN+1.gbk
258168560365821974Island text1.6667235.648329.2205Neighbours12BLASTN+581685.gbk
361683964259925761Island text2.4215437.967436.5182Neighbours12BLASTN+616839.gbk