Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015954: Halophilic archaeon DL31 chromosome, complete genome

NCBI: NC_015954

Host Lineage: halophilic archaeon DL31; unclassified Archaea; ; ; unclassified Archaea; Archaea

General Information: Novel haloarchaea from Deep Lake: an extremely cold and hypersaline Antarctic lake.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1189000*21690727908Island text2.0462830.098635.8051Neighbours12BLASTNIslandViewer 189000.gbk
246350048509921600Island text1.6221722.590421.4291Neighbours11BLASTN+463500.gbk
366586969082824960Island text1.8482926.56919.8445Neighbours11BLASTN+665869.gbk
41051440107644325004Island text1.4738420.531423.6326Neighbours11BLASTN+1051440.gbk
51222776*126551142736Island text2.2268225.228721.2289Neighbours11BLASTN+IslandViewer 1222776.gbk
61300868131982718960Island text1.5044519.844423.0661Neighbours11BLASTN+1300868.gbk
71437544146067023127Island text1.5325629.274121.178Neighbours11BLASTN+IslandViewer 1437544.gbk
81662129*169754735419Island text1.9664927.544924.8902Neighbours11BLASTN+IslandViewer 1662129.gbk
91739789*176186622078Island text1.5286225.136816.7819Neighbours11BLASTN1739789.gbk
101986705200882722123Island text1.6550219.769917.8036Neighbours11BLASTN+IslandViewer 1986705.gbk
112289717230925819542Island text1.4859319.552528.6088Neighbours11BLASTN+2289717.gbk
122405527*243197026444Island text1.6690622.621530.8268Neighbours11BLASTN+IslandViewer 2405527.gbk
132764919*280819843280Island text1.7444625.480125.5036Neighbours11BLASTN2764919.gbk
142873402289726923868Island text1.441620.093631.7396Neighbours11BLASTN2873402.gbk