Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015953: Streptomyces sp. SirexAA-E chromosome, complete genome

NCBI: NC_015953

Host Lineage: Streptomyces; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: An aerobic microbe that is a prominent member of a bacterial/fungal symbiotic community associated with the invasive pinewood-boring wasp Sirex noctilio. Free-living soil microorganisms.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111548815488Island text2.1707413.312726.4131Neighbours11BLASTNIslandViewer 1.gbk
2467328409937368Island text1.8561713.43418.237Neighbours11BLASTN+IslandViewer 46732.gbk
31581542*160650824967Island text1.546717.793633.9533Neighbours11BLASTN+1581542.gbk
41756493177842421932Island text1.5473918.014320.0527Neighbours11BLASTN1756493.gbk
51860946187926918324Island text1.7723513.193112.9127Neighbours11BLASTN+IslandViewer 1860946.gbk
61983821200380019980Island text1.774913.860712.1041Neighbours11BLASTN+1983821.gbk
72059083208140822326Island text1.6615215.162214.6691Neighbours11BLASTN+2059083.gbk
82349503*238809938597Island text2.0911715.273312.6403Neighbours11BLASTN+IslandViewer 2349503.gbk
92512152253676224611Island text2.3209214.872218.0753Neighbours11BLASTN+2512152.gbk
102603526262609922574Island text2.1212513.177916.7682Neighbours11BLASTN2603526.gbk
112640500266269222193Island text1.7738114.080730.2304Neighbours11BLASTN+2640500.gbk
122681331*270540224072Island text1.76512.882616.6806Neighbours11BLASTN2681331.gbk
133159234*318318823955Island text1.3828913.345114.5146Neighbours11BLASTN+3159234.gbk
143227000325159924600Island text3.0753918.206617.6883Neighbours11BLASTN+IslandViewer 3227000.gbk
153258000327922821229Island text2.7879715.026413.8707Neighbours11BLASTN+IslandViewer 3258000.gbk
163313000333519422195Island text1.658913.939623.433Neighbours11BLASTN+IslandViewer 3313000.gbk
173456535350619749663Island text2.6679716.092618.4263Neighbours11BLASTN+IslandViewer 3456535.gbk
183684065*371159927535Island text1.7467312.846113.45Neighbours11BLASTN3684065.gbk
193782302*381186629565Island text3.3709419.449914.3745Neighbours11BLASTNIslandViewer 3782302.gbk
203860467*388114620680Island text2.8388514.963118.243Neighbours11BLASTNIslandViewer 3860467.gbk
214045500406559920100Island text1.6342713.526615.7693Neighbours11BLASTN+IslandViewer 4045500.gbk
224385419*443376948351Island text1.6082918.088823.5626Neighbours11BLASTN+4385419.gbk
234746983477386726885Island text1.9376618.791516.5661Neighbours11BLASTN+4746983.gbk
244793484481122917746Island text1.4910216.938221.4764Neighbours11BLASTN+4793484.gbk
254908069*493639628328Island text1.9307616.990429.6492Neighbours11BLASTN4908069.gbk
265444572*547270028129Island text4.3351620.214325.539Neighbours11BLASTN5444572.gbk
275612446563718724742Island text1.7370116.864526.4283Neighbours11BLASTN5612446.gbk
285777116583193254817Island text1.5006314.366529.6138Neighbours11BLASTN5777116.gbk
295865733590682141089Island text1.817514.268621.9563Neighbours11BLASTN+5865733.gbk
305908467592977521309Island text1.6040815.539915.9727Neighbours11BLASTN+5908467.gbk
316212366625841846053Island text1.888815.292921.5763Neighbours11BLASTN+IslandViewer 6212366.gbk