Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015948: Haloarcula hispanica ATCC 33960 chromosome chromosome I, complete

NCBI: NC_015948

Host Lineage: Haloarcula hispanica; Haloarcula; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Haloarcula hispanica is a halophilic archaeon. Extremely halophilic archaeon. Has an unusually low restriction barrier. First isolated from a solar saltern in Spain. Ability to accumulate polyhydroxyalkanoate (PHA) when carbon sources are in excess.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1334000*36222928230Island text1.8587525.584824.5462Neighbours11BLASTN+IslandViewer 334000.gbk
21131628*115767026043Island text2.4394527.103223.4673Neighbours11BLASTN1131628.gbk
31590297*163002839732Island text5.3732645.307524.8484Neighbours12BLASTN+IslandViewer 1590297.gbk
41636491*166153625046Island text2.3043629.550325.5234Neighbours11BLASTNIslandViewer 1636491.gbk
52032399*207910946711Island text3.8713340.15325.2324Neighbours12BLASTN+IslandViewer 2032399.gbk
62367000239312826129Island text1.9981226.551436.0458Neighbours11BLASTN2367000.gbk
72421933*244059218660Island text1.6583421.327821.5069Neighbours11BLASTN+2421933.gbk
82704046*273771533670Island text3.6626536.527232.8361Neighbours11BLASTN+IslandViewer 2704046.gbk