Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015947: Burkholderia sp. JV3 chromosome, complete genome

NCBI: NC_015947

Host Lineage: Stenotrophomonas maltophilia; Stenotrophomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: Environment: Rhizosphere, Host, Rhizosphere-colonizing; Temp: Mesophile. This species is an uncommon but serious source of infection in patients with breathing tubes such as endotracheal or tracheostomy tubes, or with chronically indwelling urinary catheters. Although the organism can colonize the devices without causing an infection, under certain conditions it can cause pneumonia, urinary tract infections, or an infection of the blood. This organism can also cause infection in immunocompromised patients. It has resistance to many commonly used antibiotics and therefore is often difficult to eradicate. Most strains are resistant to co-trimoxazole.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
122318424748524302Island text1.7392621.281223.796Neighbours11BLASTN223184.gbk
2280095*30478024686Island text2.1517723.945722.1743Neighbours11BLASTNIslandViewer 280095.gbk
344446646432519860Island text1.7216422.468424.1747Neighbours11BLASTNIslandViewer 444466.gbk
456812459380225679Island text1.6856121.941922.1121Neighbours11BLASTN+IslandViewer 568124.gbk
51142206116795825753Island text2.404928.270124.8215Neighbours11BLASTN+IslandViewer 1142206.gbk
61290614131509924486Island text1.8026222.571428.4815Neighbours11BLASTN+1290614.gbk
71877887190023222346Island text1.8129122.619224.7892Neighbours11BLASTNIslandViewer 1877887.gbk
81937341196618728847Island text1.6041719.760820.5065Neighbours11BLASTNIslandViewer 1937341.gbk
92231493225840026908Island text2.1939220.866217.4447Neighbours11BLASTNIslandViewer 2231493.gbk
102360592238231521724Island text1.5257320.852122.8164Neighbours11BLASTN+IslandViewer 2360592.gbk
112752450277630223853Island text1.7661623.424222.4914Neighbours11BLASTN2752450.gbk
123539472355883219361Island text1.6292316.99618.0655Neighbours11BLASTNIslandViewer 3539472.gbk
133991696*401521623521Island text1.6638219.496319.2954Neighbours11BLASTNIslandViewer 3991696.gbk
144196800422059923800Island text2.0702321.295417.5749Neighbours11BLASTNIslandViewer 4196800.gbk
154248536*427259924064Island text1.8688821.767124.868Neighbours11BLASTN+4248536.gbk