Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015944: Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequence

NCBI: NC_015944

Host Lineage: Haloarcula hispanica; Haloarcula; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Haloarcula hispanica is a halophilic archaeon. Extremely halophilic archaeon. Has an unusually low restriction barrier. First isolated from a solar saltern in Spain. Ability to accumulate polyhydroxyalkanoate (PHA) when carbon sources are in excess.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1105003647525976Island text1.9181430.537730.1398Neighbours11BLASTN+10500.gbk
216223318119918967Island text1.7470927.101622.0094Neighbours12BLASTN162233.gbk
335365238073527084Island text2.8822838.190935.949Neighbours12BLASTN353652.gbk
438411941399929881Island text2.2247931.032626.6419Neighbours12BLASTN384119.gbk