Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015943: Haloarcula hispanica ATCC 33960 chromosome chromosome II, complete

NCBI: NC_015943

Host Lineage: Haloarcula hispanica; Haloarcula; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Haloarcula hispanica is a halophilic archaeon. Extremely halophilic archaeon. Has an unusually low restriction barrier. First isolated from a solar saltern in Spain. Ability to accumulate polyhydroxyalkanoate (PHA) when carbon sources are in excess.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111661716617Island text1.5236329.143437.9035Neighbours12BLASTN1.gbk
2470006937622377Island text1.6868134.343330.2926Neighbours12BLASTNIslandViewer 47000.gbk
3720009435222353Island text1.5259430.763628.5845Neighbours12BLASTN72000.gbk
49597111809922129Island text1.3941431.845817.2128Neighbours12BLASTN+95971.gbk
5171500*19696125462Island text1.7927234.860627.3221Neighbours12BLASTN+171500.gbk