Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015942: Acidithiobacillus ferrivorans SS3 chromosome, complete genome

NCBI: NC_015942

Host Lineage: Acidithiobacillus ferrivorans; Acidithiobacillus; Acidithiobacillaceae; Acidithiobacillales; Proteobacteria; Bacteria

General Information: Isolation: Norilsk, Russia; Temp: Psychrotolerant. This organism is an acidophilic bacterium able to grow at a pH as low as 1.9 (optimum pH of 2.5). This bacterium is able to grow using sulfur and ferrous iron as electron donors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
163440*8731823879Island text1.911338.058821.137Neighbours54BLASTN+IslandViewer 63440.gbk
235594438671330770Island text2.2294739.800525.4193Neighbours11BLASTN+IslandViewer 355944.gbk
340329642214018845Island text1.6678133.412430.6351Neighbours11BLASTN+IslandViewer 403296.gbk
444730847065923352Island text1.6740235.151229.4568Neighbours11BLASTN+IslandViewer 447308.gbk
566877569229623522Island text1.7519433.56438.4371Neighbours11BLASTN668775.gbk
672298074620423225Island text1.4560734.289935.5951Neighbours11BLASTN+IslandViewer 722980.gbk
7763500*78368620187Island text1.8229332.562447.2175Neighbours11BLASTN+763500.gbk
878780881145823651Island text1.4080435.621429.9732Neighbours11BLASTN+787808.gbk
91047576107197424399Island text1.8298634.940944.3233Neighbours11BLASTN+1047576.gbk
101167785119371425930Island text2.7083538.027639.5455Neighbours41BLASTNIslandViewer 1167785.gbk
111711026*173659925574Island text1.8459536.339132.5869Neighbours11BLASTN1711026.gbk
121824847185470329857Island text1.7952334.793334.2856Neighbours14BLASTNIslandViewer 1824847.gbk
131889421191431624896Island text1.5803336.144141.5118Neighbours45+IslandViewer 1889421.gbk
141920693194165820966Island text1.50433.277624.7533Neighbours11BLASTNIslandViewer 1920693.gbk
151947258196818120924Island text1.5214433.262418.7386Neighbours54BLASTN+IslandViewer 1947258.gbk
162060349207937919031Island text1.8877931.799232.2938Neighbours41BLASTN+IslandViewer 2060349.gbk
172213710*223882125112Island text1.6700435.295634.8875Neighbours33BLASTN+IslandViewer 2213710.gbk
182293455*231259919145Island text1.5637532.788232.172Neighbours11BLASTN+IslandViewer 2293455.gbk
192316354234809931746Island text3.1441143.412524.5804Neighbours41BLASTN+IslandViewer 2316354.gbk
202544407256835223946Island text1.9373738.365629.2209Neighbours11BLASTN+IslandViewer 2544407.gbk
212669292*268906519774Island text1.6455731.609953.5769Neighbours52BLASTN2669292.gbk
222943127296667923553Island text1.7170431.344233.4876Neighbours11BLASTN+2943127.gbk
233090275311959929325Island text3.4853945.36623.1811Neighbours41BLASTN+IslandViewer 3090275.gbk
243147514*317392626413Island text2.3417535.667436.2592Neighbours11BLASTNIslandViewer 3147514.gbk
253185193321099925807Island text1.5276733.457441.1891Neighbours11BLASTN3185193.gbk