Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015930: Lactococcus garvieae ATCC 49156, complete genome

NCBI: NC_015930

Host Lineage: Lactococcus garvieae; Lactococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactococcus garviae is responsible for mastitis in cows and buffalos, and it has been isolated from clinical specimens of human blood, urine, and skin. Lactococcus garvieae is also a well recognized bacterial fish pathogen. L. garvieae as the etiological agent of a hemorrhagic septicemia in farmed trout that was characterized by bilateral exophthalmos, darkening of the skin, congestion of the intestine, liver, kidney, spleen, and brain.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118969*3942820460Island text1.8615820.373325.7888Neighbours21BLASTN+18969.gbk
282134284322321882Island text1.5918220.869432.7643Neighbours21BLASTN+821342.gbk
31105882112716221281Island text1.7499622.716628.3226Neighbours21BLASTN+IslandViewer 1105882.gbk
41397524141609918576Island text3.7376119.126914.5511Neighbours21BLASTN+IslandViewer 1397524.gbk