Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015921: Borrelia bissettii DN127 chromosome, complete genome

NCBI: NC_015921

Host Lineage: Borrelia bissettii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Borrelia bissettii DN127 was isolated from a western blackleg tick, Ixodes pacificus, in California. This strain has pattern of outer surface proteins that is different from many other North American strains. Human pathogen.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127251729332520809Island text1.5275716.344829.7509Neighbours21BLASTN272517.gbk
2387451*40893921489Island text1.5495817.489333.532Neighbours21BLASTN+387451.gbk
3425225*45330328079Island text2.3247521.369537.9154Neighbours21BLASTN425225.gbk
4481532*50162120090Island text1.6758216.464233.4352Neighbours21BLASTN481532.gbk
5757776*78029622521Island text2.608615.117329.961Neighbours21757776.gbk