Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015914: Cyclobacterium marinum DSM 745 chromosome, complete genome

NCBI: NC_015914

Host Lineage: Cyclobacterium marinum; Cyclobacterium; Cyclobacteriaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: Isolation: Coelomic fluid of a sand dollar; Temp: Mesophile. Gram-negative bacterium isolated from coelomic fluid of a sand dollarfish (Poronotus triacanthus) of the family Stromateidae (butterfish family), a family of fishes with almost circular bodies and small mouths. The dollarfish (genus Peprilus), is found from Maine to South Carolina, USA during the summer.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1613069822636921Island text2.1956936.3450.7971Neighbours21+61306.gbk
2111382*13416822787Island text1.4795422.306732.9151Neighbours21BLASTN+IslandViewer 111382.gbk
327941330305723645Island text1.9751920.956733.4998Neighbours21279413.gbk
462141164112419714Island text1.497721.327832.9273Neighbours21+IslandViewer 621411.gbk
5917124*93665219529Island text1.601320.540531.3193Neighbours21BLASTN+917124.gbk
62230076*226011830043Island text2.5049232.208644.3395Neighbours21BLASTN+2230076.gbk
72658845268279123947Island text1.7520319.172537.5137Neighbours21BLASTN+2658845.gbk
82769042*279249823457Island text1.5011822.762631.9284Neighbours21BLASTN2769042.gbk
93197772*322471226941Island text2.0259930.722939.7533Neighbours21BLASTN3197772.gbk
103317029*334304226014Island text2.4372131.507441.9182Neighbours21BLASTN3317029.gbk
114046000406387017871Island text1.7846520.540530.7102Neighbours21BLASTN+IslandViewer 4046000.gbk
124248000*427071122712Island text1.5526622.973736.7088Neighbours21BLASTN+IslandViewer 4248000.gbk
134489601450947919879Island text1.4951726.611130.2107Neighbours214489601.gbk
145470926*548972418799Island text1.5007224.288733.4267Neighbours21BLASTN+IslandViewer 5470926.gbk