Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015913: Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome

NCBI: NC_015913

Host Lineage: Arthromitus; Arthromitus; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Segmented filamentous bacteria (SFBs), which are clostridia-related Gram-positive bacteria, are among such non-culturable populations and are well known for their unique morphology and tight attachment to intestinal epithelial cells.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135837*6792032084Island text5.8378924.524141.4136Neighbours21BLASTNIslandViewer 35837.gbk
211796615176933804Island text2.9431820.504734.4528Neighbours21BLASTN+117966.gbk
3178451*20235223902Island text2.512522.416743.4091Neighbours21BLASTN+178451.gbk
4293980*31569721718Island text5.3012727.346146.6528Neighbours21BLASTN293980.gbk
562485964365018792Island text2.5546119.959932.8329Neighbours21BLASTN624859.gbk
61082323110268920367Island text2.4091120.973238.2568Neighbours21BLASTN1082323.gbk
71117500*114045222953Island text1.6370421.882428.0287Neighbours21BLASTN1117500.gbk
81248000*127069822699Island text2.9157118.856428.8342Neighbours21BLASTN+IslandViewer 1248000.gbk
91422444*144471122268Island text2.1649920.476735.5978Neighbours21BLASTN+IslandViewer 1422444.gbk
101491393*153098039588Island text3.9990921.10438.3922Neighbours21BLASTN1491393.gbk