Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015875: Streptococcus pseudopneumoniae IS7493 chromosome, complete genome

NCBI: NC_015875

Host Lineage: Streptococcus pseudopneumoniae; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Obtained from the sputum of a patient with human immunodeficiency virus (HIV) who had documented pneumonia.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1342705351219243Island text1.8809725.884648.258Neighbours21BLASTN+IslandViewer 34270.gbk
2190041*21116121121Island text1.9683926.309844.3994Neighbours21BLASTN+IslandViewer 190041.gbk
3646000*66924423245Island text1.6325526.06437.8548Neighbours21BLASTN646000.gbk
41505034*152997824945Island text1.8158128.793840.1942Neighbours21BLASTN+1505034.gbk
51926981*194941322433Island text1.6773826.612437.7891Neighbours21BLASTN+1926981.gbk