Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015873: Megasphaera elsdenii DSM 20460, complete genome

NCBI: NC_015873

Host Lineage: Megasphaera elsdenii; Megasphaera; Veillonellaceae; Selenomonadales; Firmicutes; Bacteria

General Information: Isolation: rumen of sheep. Human and animal pathogen. Gram-negative ruminal bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
163487*8534421858Island text1.9629135.800426.7869Neighbours335BLASTN+63487.gbk
2238187*25884720661Island text1.9615336.242420.1618Neighbours335BLASTN+238187.gbk
3380485*41159931115Island text2.4262839.586929.2256Neighbours32BLASTN+IslandViewer 380485.gbk
4450593*47420523613Island text1.5196836.195133.6555NeighboursBLASTN+IslandViewer 450593.gbk
5790961*81087819918Island text1.7514933.596836.9168Neighbours335BLASTN+790961.gbk
692439297716752776Island text5.0740149.07620.9357Neighbours21BLASTN+IslandViewer 924392.gbk
71119500*114245822959Island text2.2145236.84227.0366Neighbours335BLASTN+IslandViewer 1119500.gbk
81193843*123304039198Island text2.2595238.091229.7151Neighbours335BLASTN+1193843.gbk
91241354*126538824035Island text1.5039937.037934.2368Neighbours335BLASTN+IslandViewer 1241354.gbk
101411718*143611624399Island text1.871839.019541.2435Neighbours335BLASTN+IslandViewer 1411718.gbk
111487127150821921093Island text1.6638436.010526.3694Neighbours335BLASTNIslandViewer 1487127.gbk
121557999158220124203Island text1.7080135.79445.4818Neighbours335BLASTN+IslandViewer 1557999.gbk
131901939*192735525417Island text3.2902242.290922.9074Neighbours335BLASTNIslandViewer 1901939.gbk
141933036*195631123276Island text1.4873340.965539.2009Neighbours335BLASTNIslandViewer 1933036.gbk
152105847214108435238Island text2.5789841.095738.3544BLASTN+IslandViewer 2105847.gbk
162197412221909921688Island text1.6757537.785733.054Neighbours335BLASTN+IslandViewer 2197412.gbk
172260048228220422157Island text1.6292436.938640.9875Neighbours335BLASTN2260048.gbk
182294312*231436820057Island text1.4978535.44533.8896Neighbours335BLASTN+2294312.gbk