Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015866: Rickettsia heilongjiangensis 054 chromosome, complete genome

NCBI: NC_015866

Host Lineage: Rickettsia heilongjiangensis; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Location: China: Heilongjiang province, Host: Dysmicoccus sylvarum ticks. A tick-transmitted human pathogen causing Spotted fever.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114071*3274218672Island text1.973911.882924.2234Neighbours21BLASTN+14071.gbk
2173951*19294118991Island text1.5102812.974226.0141Neighbours21BLASTN+173951.gbk
323344825473021283Island text1.7233812.57922.3097Neighbours21BLASTN+233448.gbk
4274550*29923324684Island text1.4802113.101924.4244Neighbours21BLASTN+274550.gbk
5767790*79562627837Island text1.8532211.329624.4792Neighbours21BLASTN+767790.gbk
6933500*96409930600Island text2.1137414.501127.7148Neighbours21BLASTN+933500.gbk
71144958*116861223655Island text1.5431515.893925.0964Neighbours21BLASTN1144958.gbk