Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015865: Thermococcus sp. 4557 chromosome, complete genome

NCBI: NC_015865

Host Lineage: Thermococcus; Thermococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea

General Information: Sulfur-reducing, strictly anaerobic, and hyperthermophilic archaeon. Isolated from the deep-sea hydrothermal vent Guaymas Basin site in the Gulf of California at a depth of 2,000 m.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
13657*6356859912Island text1.7330229.319848.1988Neighbours313BLASTN3657.gbk
2229883*25509925217Island text1.920736.917733.9028Neighbours313BLASTN229883.gbk
3503585*52915125567Island text1.8448634.909539.336Neighbours313BLASTN503585.gbk
4685882*71136625485Island text2.0579838.975535.9366Neighbours313BLASTNIslandViewer 685882.gbk
51108089*113953831450Island text2.515645.086929.2449Neighbours313BLASTNIslandViewer 1108089.gbk
61260461*128800227542Island text2.8745449.048729.486Neighbours313BLASTNIslandViewer 1260461.gbk
71468689*150095232264Island text2.9688847.479432.1632Neighbours313BLASTN+IslandViewer 1468689.gbk