Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015859: Corynebacterium variabile DSM 44702 chromosome, complete genome

NCBI: NC_015859

Host Lineage: Corynebacterium variabile; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Originally isolated from the smear-ripened cheese Gubbeen. C. variabile is salt-tolerant and able to grow in the presence of 8.0% NaCl and at pH values below 4.9.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
137050038932118822Island text1.8710715.217725.4842Neighbours11BLASTN+IslandViewer 370500.gbk
2952500100320850709Island text1.7501720.215330.0145Neighbours11BLASTN+952500.gbk
31069116109541926304Island text1.9169118.231726.3491Neighbours11BLASTN+IslandViewer 1069116.gbk
41099919*113350433586Island text2.2813421.219522.3743Neighbours11BLASTN+1099919.gbk
51147537117043022894Island text3.0084922.516341.689Neighbours11BLASTN1147537.gbk
61536439156796931531Island text2.1171117.921120.4545Neighbours11BLASTN+IslandViewer 1536439.gbk
71589707160923119525Island text1.6495516.240323.925Neighbours11BLASTN+IslandViewer 1589707.gbk
81631573165925327681Island text3.566121.827429.9141Neighbours11BLASTN+IslandViewer 1631573.gbk
91898693192889630204Island text1.8934619.236824.8259Neighbours11BLASTN+1898693.gbk
102726414274559919186Island text1.5699215.39725.4964Neighbours11BLASTN+IslandViewer 2726414.gbk
113126500314878722288Island text1.8797417.847521.5784Neighbours11BLASTN+IslandViewer 3126500.gbk
123177199*321545938261Island text2.1700420.102223.3193Neighbours11BLASTN+IslandViewer 3177199.gbk
133346473337186825396Island text2.2025819.327621.5225Neighbours11BLASTN+IslandViewer 3346473.gbk