Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015856: Collimonas fungivorans Ter331 chromosome, complete genome

NCBI: NC_015856

Host Lineage: Collimonas fungivorans; Collimonas; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Collimonas fungivorans is able to degrade chitin, a major component of the cell wall of fungi, and can grow at the expense of living fungi. Soil bacteria that are known for their antifungal activity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112197121971Island text2.331334.068925.4037Neighbours11BLASTNIslandViewer 1.gbk
2293384929919962Island text1.5128829.854735.592Neighbours11BLASTN+29338.gbk
326803429827830245Island text2.638238.526429.0951Neighbours11BLASTN+268034.gbk
443979546209022296Island text1.6084830.861624.6139Neighbours11BLASTN439795.gbk
563335365700023648Island text1.6326728.869826.8372Neighbours11BLASTN633353.gbk
6764651*79679232142Island text2.1490334.192525.1094Neighbours11BLASTN+764651.gbk
7940625*98805147427Island text1.8138132.407324.9137Neighbours11BLASTN+940625.gbk
81152021117726325243Island text2.1535937.371418.7337Neighbours11BLASTN+IslandViewer 1152021.gbk
91182974*120901726044Island text1.7961432.148716.255Neighbours11BLASTN+IslandViewer 1182974.gbk
101271295*129109919805Island text1.5478828.150520.4836Neighbours11BLASTN+IslandViewer 1271295.gbk
111733500176113127632Island text2.4196834.393923.6313Neighbours11BLASTN+1733500.gbk
122146713217626629554Island text1.7453934.191730.4821Neighbours11BLASTN+2146713.gbk
132488297252114632850Island text2.0189632.688636.887Neighbours11BLASTN+2488297.gbk
142646816267066123846Island text1.5352830.307629.6626Neighbours11BLASTN+2646816.gbk
153059737308304923313Island text1.9054634.884320.1716Neighbours11BLASTN+IslandViewer 3059737.gbk
163170771*319449023720Island text1.7870233.843627.518Neighbours11BLASTN+3170771.gbk
173436951346108124131Island text1.3118424.963534.2794Neighbours11BLASTN+3436951.gbk
183536441*356339226952Island text1.6529928.287421.0203Neighbours11BLASTN+3536441.gbk
193675592*370001824427Island text1.4974931.043320.2826Neighbours11BLASTN+3675592.gbk
203832000385524023241Island text1.4418228.04624.2173Neighbours11BLASTN3832000.gbk
213912195*394272630532Island text1.711633.899226.8878Neighbours11BLASTN+3912195.gbk
224203301*422687423574Island text1.5068934.153130.7437Neighbours11BLASTN4203301.gbk
234301230432159920370Island text1.6283329.525720.761Neighbours11BLASTN4301230.gbk
244342500437154729048Island text2.0236933.068922.6382Neighbours11BLASTN+IslandViewer 4342500.gbk
254975815*499935023536Island text1.7649831.740228.0463Neighbours11BLASTN4975815.gbk