Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015850: Acidithiobacillus caldus SM-1 chromosome, complete genome

NCBI: NC_015850

Host Lineage: Acidithiobacillus caldus; Acidithiobacillus; Acidithiobacillaceae; Acidithiobacillales; Proteobacteria; Bacteria

General Information: Acidithiobacillus caldus (formerly Thiobacillus caldus) is a moderately thermophilic, acidophilic, sulphur-oxidizing and obligately chemolithotrophic bacterium. Isolated from a pilot bioleaching reactor.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111036416840658043Island text2.1474926.335430.2162Neighbours11BLASTN+110364.gbk
216918020809938920Island text1.5715225.222222.0532Neighbours11BLASTN+IslandViewer 169180.gbk
321749524458327089Island text2.3446129.709729.509Neighbours11BLASTN+IslandViewer 217495.gbk
451083753948728651Island text2.058729.455623.6912Neighbours11BLASTN+IslandViewer 510837.gbk
5548821*57253023710Island text1.75824.887524.2417Neighbours11BLASTN+IslandViewer 548821.gbk
673668075815321474Island text1.8459225.62729.1892Neighbours11BLASTNIslandViewer 736680.gbk
776150079592234423Island text2.4153429.888335.0833Neighbours11BLASTN+IslandViewer 761500.gbk
81006980104635039371Island text1.7414228.521233.3173Neighbours11BLASTN+IslandViewer 1006980.gbk
91060000*108209922100Island text1.6548524.948327.5064Neighbours11BLASTN+1060000.gbk
101155376*118208926714Island text1.8450625.402942.7754Neighbours11BLASTN1155376.gbk
111220444124118720744Island text1.4829225.413416.6403Neighbours11BLASTNIslandViewer 1220444.gbk
121242010126087418865Island text1.5181723.379736.1859Neighbours11BLASTNIslandViewer 1242010.gbk
131279372129959920228Island text1.7866625.066638.2049Neighbours11BLASTNIslandViewer 1279372.gbk
141497998152169123694Island text1.6161724.972630.9843Neighbours11BLASTN1497998.gbk
151614965163735922395Island text1.7518125.954643.6514Neighbours11BLASTN+IslandViewer 1614965.gbk
161850741187384623106Island text2.0446425.74926.2979Neighbours11BLASTN+IslandViewer 1850741.gbk
171947000199559948600Island text1.9788626.245926.8805Neighbours11BLASTN+IslandViewer 1947000.gbk
182048251212965581405Island text1.914227.385532.8048Neighbours11BLASTN+IslandViewer 2048251.gbk
192147682217960631925Island text1.9499728.149235.34Neighbours11BLASTN+2147682.gbk
202259769*228620926441Island text1.8700229.71437.0816Neighbours11BLASTN+2259769.gbk
212451957247450422548Island text1.5308424.781130.4605Neighbours11BLASTN+2451957.gbk