Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015847: Methanococcus maripaludis XI chromosome, complete genome

NCBI: NC_015847

Host Lineage: Methanococcus maripaludis; Methanococcus; Methanococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Methanococcus maripaludis is an obligately anaerobic, mesophilic, methane-producing archaeon. Growth on hydrogen and carbon dioxide results in the production of methane as a waste product. M. maripaludis stands out among methanogenic archaea as an ideal model species because of fast reproducible growth and effective genetic tools.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
180893183326024330Island text1.4038919.005430.2899Neighbours21BLASTN+IslandViewer 808931.gbk
290993893286822931Island text1.9373620.497936.0763Neighbours21BLASTN+909938.gbk
31119666*114458724922Island text1.6429227.474533.4227Neighbours21BLASTN+1119666.gbk
41261276*129574034465Island text1.5031524.848230.9058Neighbours21BLASTN+1261276.gbk
51418036*144657828543Island text1.9254224.327937.155Neighbours21BLASTN+1418036.gbk
61462068*148728825221Island text2.1616122.132237.2551Neighbours21BLASTN+1462068.gbk
71589834161376523932Island text1.8091929.679832.8071Neighbours21BLASTN1589834.gbk
81712023*173469122669Island text1.9859625.882230.3612Neighbours21BLASTN+1712023.gbk