Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015846: Capnocytophaga canimorsus Cc5 chromosome, complete genome

NCBI: NC_015846

Host Lineage: Capnocytophaga canimorsus; Capnocytophaga; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Capnocytophaga canimorsus is a commensal Gram-negative bacterium from the canine oral cavity that may cause severe zoonosis after dog bites. Capnocytophaga canimorsus is able to escape and modulate innate immunity at several levels and has the unusual property to feed on cultured mammalian cells, including phagocytes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124771*4558820818Island text1.5126324.406621.597Neighbours21BLASTN24771.gbk
267603*9102023418Island text1.5965329.438742.769Neighbours21BLASTN67603.gbk
336950039182822329Island text1.5972132.46943.068Neighbours21BLASTN+369500.gbk
444500046723722238Island text1.5500725.92533.3928Neighbours21BLASTN445000.gbk
5493388*51845425067Island text1.7782225.838236.8222Neighbours21BLASTN493388.gbk
6531984*55566123678Island text1.9881428.231444.133Neighbours21BLASTN531984.gbk
7790374*81424523872Island text2.0140228.010446.2663Neighbours21BLASTN790374.gbk
892408794820124115Island text1.5210818.801723.1088Neighbours21BLASTN924087.gbk
91065692*108911823427Island text1.7367725.133836.7293Neighbours21BLASTN+1065692.gbk
101395358142159926242Island text1.9448628.553143.4007Neighbours21BLASTN1395358.gbk
111522171154890326733Island text1.8336227.596441.9471Neighbours21BLASTN1522171.gbk
122285017*230800222986Island text1.8275220.878936.3886Neighbours21BLASTN2285017.gbk