Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015759: Weissella koreensis KACC 15510 chromosome, complete genome

NCBI: NC_015759

Host Lineage: Weissella koreensis; Weissella; Leuconostocaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Isolated from Chinese cabbage kimchi. Kimchi, a representative Korean fermented food. Gram-positive, non-spore-forming, heterofermentative, and nonmotile short-rod bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1536929*55509918171Island text1.5219621.674429.2423Neighbours325BLASTNIslandViewer 536929.gbk
266750568645218948Island text1.8582418.21825.7218Neighbours21BLASTN+667505.gbk
3726612*74738220771Island text2.2962818.733423.1492Neighbours21+726612.gbk
4760671*78432623656Island text1.5857120.016333.0235Neighbours21BLASTN+760671.gbk
51117122114009922978Island text1.92816.980827.0739Neighbours21BLASTN+1117122.gbk