Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015757: Sulfobacillus acidophilus TPY chromosome, complete genome

NCBI: NC_015757

Host Lineage: Sulfobacillus acidophilus; Sulfobacillus; Clostridiales Family XVII; Clostridiales; Firmicutes; Bacteria

General Information: Sulfobacillus acidophilus was first isolated from a coal spoil heap in the United Kingdom. This orgainism is an acidophilic sulfur- and iron-oxidizing bacterium capable of autotrophic growth on iron and sulfur.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
14680*2877424095Island text1.4928225.60837.9096Neighbours342BLASTN+4680.gbk
270790*9473523946Island text1.8378436.366429.0436Neighbours342BLASTN70790.gbk
3158014*18132923316Island text1.8015125.971532.2715Neighbours342BLASTN+158014.gbk
4263938*28802724090Island text1.7576425.755837.3279Neighbours342BLASTN+263938.gbk
583128585110419820Island text1.5739227.942629.89Neighbours342831285.gbk
696344798414420698Island text1.5891527.948750.9349Neighbours342BLASTN963447.gbk
71329012136159932588Island text2.9286438.594437.7977Neighbours342+IslandViewer 1329012.gbk
81973925199609922175Island text1.5500231.341843.3607Neighbours342BLASTN+1973925.gbk
92343193239669553503Island text1.8240732.425830.6232Neighbours342BLASTN+2343193.gbk
102459424248015420731Island text1.6676329.097828.5906Neighbours342BLASTN+2459424.gbk
112844599286437519777Island text1.651531.207453.2525Neighbours3422844599.gbk
122890479*291259922121Island text2.0075229.747235.4398Neighbours342BLASTN+IslandViewer 2890479.gbk