Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015740: Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete

NCBI: NC_015740

Host Lineage: Pseudomonas stutzeri; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas stutzeri is a nonfluorescent denitrifying bacterium widely distributed in the environment. The Pseudomonas stutzeri species possesses a high degree of phenotypic and genotypicheterogeneity. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111063313313122499Island text1.6423521.436435.8631Neighbours11BLASTN+110633.gbk
214191016419522286Island text1.4069621.029920.2887Neighbours11BLASTN+IslandViewer 141910.gbk
3636667*65977523109Island text1.6457222.682723.6108Neighbours11BLASTN636667.gbk
4926920*94828521366Island text1.8176721.275133.6376Neighbours11BLASTN926920.gbk
51017000*104061723618Island text1.6421622.310329.1649Neighbours11BLASTN+1017000.gbk
61291739131529623558Island text1.7686520.391523.8153Neighbours11BLASTN+IslandViewer 1291739.gbk
71594376161634721972Island text2.0158721.88939.4114Neighbours11BLASTN1594376.gbk
81845370186638521016Island text1.9473822.68120.979Neighbours11BLASTN+IslandViewer 1845370.gbk
92407500*244682739328Island text2.9735632.623334.2003Neighbours11BLASTN+IslandViewer 2407500.gbk
102587323260752820206Island text2.8968627.635648.9554Neighbours11BLASTN+IslandViewer 2587323.gbk
112614317265004935733Island text3.4046932.083729.0427Neighbours11BLASTN+IslandViewer 2614317.gbk
122692023*271734525323Island text2.2601923.660325.5114Neighbours11BLASTN+2692023.gbk
132966184299075224569Island text1.5321119.799123.7874Neighbours11BLASTNIslandViewer 2966184.gbk
142998500301617517676Island text1.9391220.248732.7141Neighbours11BLASTN+IslandViewer 2998500.gbk
153486226350909922874Island text2.7039826.465240.1383Neighbours11BLASTN+IslandViewer 3486226.gbk
163631326*366173930414Island text1.6020422.992629.5775NeighboursBLASTN+IslandViewer 3631326.gbk
173678342371659938258Island text2.6677529.31343.1202Neighbours11BLASTN+IslandViewer 3678342.gbk
184072415409719824784Island text1.5009219.534329.9793Neighbours11BLASTN+4072415.gbk
194508375452814119767Island text1.5477622.987622.8636Neighbours11BLASTN+IslandViewer 4508375.gbk