Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015738: Eggerthella sp. YY7918, complete genome

NCBI: NC_015738

Host Lineage: Eggerthella; Eggerthella; Coriobacteriaceae; Coriobacteriales; Actinobacteria; Bacteria

General Information: Isolated from the intestinal flora of a healthy human.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136295*5559919305Island text1.5751533.15950.7933Neighbours14BLASTNIslandViewer 36295.gbk
2220000*24238122382Island text1.7133832.672733.0125Neighbours11BLASTNIslandViewer 220000.gbk
362929765226722971Island text1.5133734.405442.7762Neighbours11BLASTN629297.gbk
476030977964019332Island text1.6762933.207731.0797Neighbours114BLASTN760309.gbk
5838715*86430625592Island text2.3887836.391344.3397Neighbours114BLASTN+838715.gbk
6873653*89323819586Island text1.8097631.900539.7156Neighbours11BLASTN873653.gbk
7978794*104759968806Island text3.7593145.673331.107Neighbours362BLASTN+IslandViewer 978794.gbk
81114919*113659921681Island text1.6605634.823948.994Neighbours11BLASTN+1114919.gbk
91707173173685529683Island text2.3620538.85928.1179Neighbours11BLASTN+IslandViewer 1707173.gbk
101768951180405435104Island text3.808947.279437.6763Neighbours362BLASTN+1768951.gbk
111858455*188046622012Island text1.9652133.486641.2283Neighbours11IslandViewer 1858455.gbk
121925997*194822622230Island text2.1401135.472138.1435Neighbours114BLASTN1925997.gbk
131971211199659925389Island text1.9324136.310150.3041Neighbours11BLASTN1971211.gbk
142652500268856736068Island text2.454436.421329.1168BLASTN+IslandViewer 2652500.gbk
152773552279595422403Island text1.930730.98433.8024Neighbours11BLASTN2773552.gbk
162956398*298003223635Island text2.3091837.424827.3194Neighbours11BLASTNIslandViewer 2956398.gbk
173042000*306596823969Island text1.3387932.344419.1254Neighbours11BLASTN+IslandViewer 3042000.gbk