Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015737: Clostridium sp. SY8519, complete genome

NCBI: NC_015737

Host Lineage: Clostridium; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from the intestinal flora of a healthy human as a key isoflavonoid-metabolizing bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
153682*8090027219Island text2.2873433.744438.8906Neighbours37BLASTNIslandViewer 53682.gbk
214342816127817851Island text1.9934629.565938.47Neighbours37BLASTN+143428.gbk
344991447646526552Island text2.1835335.949735.0616Neighbours37BLASTN+449914.gbk
4664999*68420719209Island text1.5354828.836347.7951Neighbours51BLASTN664999.gbk
583179285759925808Island text1.9740930.228631.4655Neighbours21BLASTNIslandViewer 831792.gbk
6879545*90287223328Island text1.4477330.690748.1727Neighbours37BLASTN+879545.gbk
7981712*99969317982Island text2.069935.305255.3569Neighbours37BLASTN981712.gbk
81337605136026422660Island text2.4094435.785652.765Neighbours37BLASTN+IslandViewer 1337605.gbk
91385585140847522891Island text1.5325130.958254.7387Neighbours51+1385585.gbk
101441086146024319158Island text1.7175529.796932.5131Neighbours37BLASTN1441086.gbk
111724590174599421405Island text1.8714730.347229.2057Neighbours21IslandViewer 1724590.gbk
121931541*195374722207Island text1.9540734.995653.0491Neighbours37BLASTN1931541.gbk
131976000201129835299Island text1.9260433.238229.5188Neighbours21BLASTN+IslandViewer 1976000.gbk
142050219206809917881Island text1.4674432.54551.7603Neighbours51BLASTN2050219.gbk
152146953*216817721225Island text2.010932.430228.5532Neighbours37BLASTN+2146953.gbk
162288032230709919068Island text1.5696429.128236.4783Neighbours37BLASTN+2288032.gbk
172691246276656375318Island text2.5823336.005532.6173Neighbours21BLASTN+IslandViewer 2691246.gbk