Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015732: Spirochaeta caldaria DSM 7334 chromosome, complete genome

NCBI: NC_015732

Host Lineage: Treponema caldaria; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Environment: Fresh water, Hot spring; Temp: Mesophile; Isolation: Hunter's Hot Spring; Country: USA, Oregon. This is a thermophilic bacterium from freshwater hot springs that enhances cellulose degradation by Clostridium thermocellum.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1304727589245421Island text2.6947333.030620.7611Neighbours21+IslandViewer 30472.gbk
29181611638824573Island text1.517533.007115.4708Neighbours32BLASTN+91816.gbk
314008716032420238Island text2.2020932.16526.0872Neighbours21BLASTN+IslandViewer 140087.gbk
4191554*21513823585Island text1.6536135.972232.8037Neighbours23BLASTN191554.gbk
5529201*57271543515Island text2.0280634.24827.8431Neighbours21BLASTNIslandViewer 529201.gbk
668400070350219503Island text3.9240932.581511.6153Neighbours21BLASTN+IslandViewer 684000.gbk
777314381241539273Island text2.7832232.786718.1543Neighbours21BLASTN+IslandViewer 773143.gbk
8982774*100210619333Island text1.5140233.332322.9717Neighbours22BLASTNIslandViewer 982774.gbk
91183195121635933165Island text1.7114736.103751.77511183195.gbk
101507473*152706719595Island text1.4850733.584619.037Neighbours22BLASTN1507473.gbk
111636368165828421917Island text2.6009432.511611.7188Neighbours21BLASTN+IslandViewer 1636368.gbk
122057895208029822404Island text1.4952435.414624.6802Neighbours32BLASTN+2057895.gbk
132449900248427734378Island text4.1066634.716520.9338Neighbours21BLASTN+IslandViewer 2449900.gbk
142680182*270554825367Island text1.755137.776929.9998Neighbours32BLASTN+2680182.gbk
152710913272914718235Island text1.5180632.593619.8806Neighbours32BLASTN+2710913.gbk
162735753275409918347Island text1.5784431.797227.0313Neighbours32BLASTN+IslandViewer 2735753.gbk
172762424278646524042Island text3.3411335.289623.6317Neighbours21BLASTN+2762424.gbk
182839030*286769828669Island text1.946131.533125.3489BLASTN+2839030.gbk
192880801*290710326303Island text1.5753334.92124.9767Neighbours369BLASTN+2880801.gbk
203017387304410826722Island text1.6574134.55928.2973Neighbours32BLASTN+3017387.gbk
213105649312850922861Island text1.661832.788235.9971Neighbours21BLASTN+3105649.gbk
223145634*316449818865Island text2.6865632.505520.0694Neighbours21BLASTN+3145634.gbk