Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015731: Nitrosomonas sp. Is79A3 chromosome, complete genome

NCBI: NC_015731

Host Lineage: Nitrosomonas; Nitrosomonas; Nitrosomonadaceae; Nitrosomonadales; Proteobacteria; Bacteria

General Information: Environment: Fresh water; Isolation: freshwater lake; Temp: Mesophile. Nitrosomonas sp. (strain Is79A3) is an aerobic, chemoautotrophic, Gram-negative bacterium isolated from freshwater lake. It oxidizes ammonia into nitrite. Nitrosomonas sp. are useful in treatment of industrial and sewage waste and in the process of bioremediation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111668216682Island text1.4785835.29336.1737Neighbours11BLASTN+IslandViewer 1.gbk
225493*5177226280Island text1.4974331.201431.3985Neighbours46BLASTN+25493.gbk
316998919231522327Island text1.6540427.687331.7335Neighbours41BLASTN+169989.gbk
431367634081327138Island text2.1229931.767530.6514Neighbours21BLASTN+IslandViewer 313676.gbk
540228042109918820Island text1.6952327.292130.3082Neighbours21BLASTN+402280.gbk
644741147046523055Island text1.5010731.359419.9537Neighbours41BLASTN+IslandViewer 447411.gbk
7867377*92057653200Island text1.7119231.91437.6331Neighbours21BLASTN+IslandViewer 867377.gbk
8990000*101276122762Island text1.6765529.113234.9304Neighbours21BLASTN990000.gbk
91062824*108197319150Island text1.7991327.36514.4171Neighbours41BLASTN+1062824.gbk
101106870112833721468Island text1.5108430.143524.4518Neighbours41BLASTN+IslandViewer 1106870.gbk
111299955132299423040Island text1.7971630.057434.9345NeighboursBLASTN+IslandViewer 1299955.gbk
121381737140468922953Island text1.4847128.234434.2551Neighbours41BLASTN+1381737.gbk
131578106161233434229Island text3.0309931.894114.1251Neighbours21BLASTN+IslandViewer 1578106.gbk
141731896175529723402Island text1.6694227.05817.7854Neighbours41BLASTN1731896.gbk
152039317207331433998Island text1.7997228.612825.2764Neighbours21BLASTN+2039317.gbk
162148517*217574427228Island text2.6213129.764713.0162Neighbours21BLASTN+2148517.gbk
172400526*242549424969Island text1.5048827.468418.7234Neighbours41BLASTN+2400526.gbk
182460248*249421233965Island text2.1217228.813220.0782Neighbours21BLASTN+IslandViewer 2460248.gbk
192811579282959918021Island text1.8758726.954630.6919Neighbours41BLASTN+IslandViewer 2811579.gbk
202950874*299427243399Island text3.0386734.27632.6572Neighbours21BLASTN2950874.gbk
213077842310330625465Island text1.8529330.035437.365Neighbours41BLASTN+3077842.gbk
223180194320658126388Island text1.8752235.860624.7812Neighbours11BLASTN+IslandViewer 3180194.gbk
233274739*330258727849Island text2.2556530.546911.2245Neighbours21BLASTN+3274739.gbk
243658956*368280423849Island text1.6652334.527534.1795Neighbours41BLASTNIslandViewer 3658956.gbk