Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015730: Roseobacter litoralis Och 149 chromosome, complete genome

NCBI: NC_015730

Host Lineage: Roseobacter litoralis; Roseobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This type strain for the species was collected from seaweed and isolated by direct plating. Capable of performing aerobic anoxygenic photosynthesis. Photosynthesis genes are located on a plasmid, which is unusual for aerobic anoxygenic phototrophs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
192173594500323269Island text1.4919825.091228.9804Neighbours11BLASTN+921735.gbk
21107840*113310925270Island text1.6649930.332421.7191Neighbours11BLASTN+IslandViewer 1107840.gbk
31799500182424524746Island text1.689529.550921.4383Neighbours11BLASTN+IslandViewer 1799500.gbk
41918000194156523566Island text1.6906931.395127.0182Neighbours11IslandViewer 1918000.gbk
53662934368159918666Island text1.564527.634630.1722Neighbours11BLASTN+IslandViewer 3662934.gbk
63693391372064027250Island text1.7965828.045129.4596Neighbours11BLASTN+IslandViewer 3693391.gbk
73853065*387982526761Island text2.1304131.687343.6846Neighbours11BLASTNIslandViewer 3853065.gbk