Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015727: Cupriavidus necator N-1 plasmid BB1p, complete sequence

NCBI: NC_015727

Host Lineage: Cupriavidus necator; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Cupriavidus necator also known as Ralstonia eutropha is a soil bacterium with diverse metabolic abilities. Strains of this organism are resistant to high levels of copper or are able to degrade chloroaromatic compounds such as halobenzoates and nitrophenols making them useful for bioremediation. Other strains have been studied for their ability to produce polyhydroxybutyrates which have industrial application. Another strain is able to attack other bacteria and fungi when nutrients in the soil are low.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
176474478482720084Island text1.495323.1729.6443Neighbours11BLASTN+764744.gbk
21050500106827617777Island text1.5013224.075924.26Neighbours11BLASTN+1050500.gbk
31076927110105424128Island text1.4804223.972521.2389Neighbours11BLASTN+1076927.gbk
41294532132659932068Island text2.0518933.099527.0953Neighbours11BLASTN+1294532.gbk
51357095138059223498Island text1.488522.878220.843Neighbours11BLASTN1357095.gbk