Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015726: Cupriavidus necator N-1 chromosome 1, complete sequence

NCBI: NC_015726

Host Lineage: Cupriavidus necator; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Cupriavidus necator also known as Ralstonia eutropha is a soil bacterium with diverse metabolic abilities. Strains of this organism are resistant to high levels of copper or are able to degrade chloroaromatic compounds such as halobenzoates and nitrophenols making them useful for bioremediation. Other strains have been studied for their ability to produce polyhydroxybutyrates which have industrial application. Another strain is able to attack other bacteria and fungi when nutrients in the soil are low.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
140645043042023971Island text1.900622.381822.3486Neighbours11BLASTN+IslandViewer 406450.gbk
21813961183685622896Island text2.0674720.885721.2586Neighbours11BLASTNIslandViewer 1813961.gbk
32177783220037822596Island text1.4932421.969921.3886Neighbours11BLASTN2177783.gbk
42817352*284110123750Island text1.4327820.178714.1613Neighbours11BLASTN+IslandViewer 2817352.gbk
52862500288527722778Island text2.2105521.338935.0342Neighbours11BLASTN+IslandViewer 2862500.gbk
62923969295538631418Island text1.5489517.30320.6298Neighbours11BLASTN+IslandViewer 2923969.gbk
73280000330373523736Island text1.7123118.410816.4534Neighbours11BLASTNIslandViewer 3280000.gbk
83452232348406331832Island text1.5784417.942116.6973Neighbours11BLASTN+IslandViewer 3452232.gbk